PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09975.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 155aa    MW: 18041.1 Da    PI: 9.2626
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09975.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-3182140159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk+s+fprsYY+Ct++gC+vkk+++r   d+ vv++tYeg Hnh+
  PK09975.1  82 LDDGYRWRKYGQKTVKNSKFPRSYYKCTYQGCNVKKQIQRLCIDEGVVVTTYEGMHNHS 140
                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-3269140IPR003657WRKY domain
SuperFamilySSF1182904.32E-2874141IPR003657WRKY domain
PROSITE profilePS5081129.03477142IPR003657WRKY domain
SMARTSM007741.1E-3582141IPR003657WRKY domain
PfamPF031062.3E-2583139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
IMKEDDEEEG LKFDLQMFNS DNNNNKVGTN YQSSGTSYNN NNNNSLCGIK NGKKSSPKQG  60
HHPPKVKMHK FAFQTRSQVD VLDDGYRWRK YGQKTVKNSK FPRSYYKCTY QGCNVKKQIQ  120
RLCIDEGVVV TTYEGMHNHS IDHDYKSLNF DHIYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2872141776Probable WRKY transcription factor 4
2lex_A1e-2872141776Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833341e-106HG983334.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky5 gene), cultivar Osvald's 72, clone 4201.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086980.12e-49putative WRKY transcription factor 75
SwissprotQ9FYA23e-42WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLA0A0D6DR356e-67A0A0D6DR35_HUMLU; WRKY transcription factor
STRINGPOPTR_0001s33560.12e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-43WRKY DNA-binding protein 75